Go plots in Blast2go
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2.1 years ago
caro-ca ▴ 20

Hi! I am using Blast2go and it seems very useful, however, I don't understand the results I am getting from the GO graphs. I uploaded two Interproscan files: (1) about protein-coding genes candidates, (2) effector Candidates. Both files are from the same organism. The only difference is that for file (2) I used Signalp and Effectorp to detect effector candidates and then I used the Interproscan command line.

Now, when I plot the GO terms, the graphics are the same for file (1) and (2), even though the number of GO terms vary significantly.

For file (1): Total protein-coding genes = 11.874; Goterms = 6.198

For file (2): Effector proteins = 128; Goterms = 36

So my question is why am I having the exact GO graphs, for molecular and biological processes, if the GO terms vary in number for each file.

Thank you in advance for your help.

blast2go GO terms Interproscan graphics • 378 views
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