Question: Deferentially Expressed Genes using Genes count data obtained from RNASeq
0
gravatar for naseerkhan861
5 months ago by
naseerkhan8610 wrote:

I have obtained Genes Count data after the analysis of RNASeq dataset , Now I want to analyze my dataset and extract DEGs(Differentially Expressed Genes) as my end goal is to perform clustering using WGCA once I have the DEGs from my dataset, Can somebody guide me how to proceed or guide me any link that I can follow accordingly. Also is it a good way to proceed like this I mean first finding DEGs and then do WGCNA?

Regards

rna-seq genescount degs • 186 views
ADD COMMENTlink modified 5 months ago by Benn7.9k • written 5 months ago by naseerkhan8610
2
gravatar for Benn
5 months ago by
Benn7.9k
Netherlands
Benn7.9k wrote:

A good way to start is reading the manual of limma. Read about the RNA-seq methods and follow some of the case studies. Good luck.

ADD COMMENTlink written 5 months ago by Benn7.9k

Thanks Benn for your reply, I am reading limma, Thank you very much indeed!

ADD REPLYlink written 5 months ago by naseerkhan8610
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2007 users visited in the last hour