Platanus_allee assembler failed contig assembly

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4.5 years ago

18140010 • 0

Hi.. I am trying Platanus_allee assembler, but it shows Error(13): Solve DBG exception!!! please help me resolve it.

My command:

bio@bio-XPS-8700:~/Fareeha/Platanus/Platanus_allee_v2.0.2_Linux_x86_64$ ./platanus_allee phase \-c out_contig.fa out_junctionKmer.fa \platanus_allee phase \ -c out_contig.fa out_junctionKmer.fa \ -IP1 /home/bio/Fareeha/test/SMIX_test_data/Unzip/SDNA-270_1_head-3000000.fq /home/bio/Fareeha/test/SMIX_test_data/Unzip/SDNA-270_2_head-3000000.fq \ 2>phase.log
platanus_allee version: 2.0.2
./platanus_allee phase -c out_contig.fa out_junctionKmer.fa platanus_allee phase  -c out_contig.fa out_junctionKmer.fa  -IP1 /home/bio/Fareeha/test/SMIX_test_data/Unzip/SDNA-270_1_head-3000000.fq /home/bio/Fareeha/test/SMIX_test_data/Unzip/SDNA-270_2_head-3000000.fq  2 

Error(13): Error, SolveDBG exception!!
platanus_allee solve_DBG command failed.

How to solve this error ?

Assembly • 1.1k views

ADD COMMENT • link updated 4.4 years ago by odogan • 0 • written 4.5 years ago by 18140010 • 0

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Hi, I also have the same problem. Could you find a way of fixing it?

ADD REPLY • link 4.4 years ago by odogan • 0

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Hi I have got the same issue on v2.2.2 and share it here. The tools seems to have unresolved bug and I reported here hoping any fix.

ADD REPLY • link 4.0 years ago by memy ▴ 20

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