Question: Docking using Autodock4
gravatar for studia.biot
12 months ago by
studia.biot20 wrote:

Hello. I need to do two docking in autodock 4. The first one is soft docking and the second is re-docking without the smooth potential. I want to ask you how could I turn on/off the smooth factor in AutoDockTool interface?

docking autodock softdocking • 234 views
ADD COMMENTlink modified 12 months ago by Mensur Dlakic7.2k • written 12 months ago by studia.biot20
gravatar for Mensur Dlakic
12 months ago by
Mensur Dlakic7.2k
Mensur Dlakic7.2k wrote:

You have already asked the question here. I guess my answer shows that asking it twice does improve the likelihood of a reply, even though it shouldn't

AFAIK, smoothing factor is a number in a 0-1 range, so most numbers in this range mean that it is turned on. AutoDock4 is optimized to work with the default value of 0.5, but it is safe to assume that one of the two extreme values is the off switch.

The best way to have this sorted out is to ask the program authors directly, or go through documentation and their papers.

ADD COMMENTlink written 12 months ago by Mensur Dlakic7.2k
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