Question: Mummer for running multiple query files
0
gravatar for Ambika
11 months ago by
Ambika30
United States
Ambika30 wrote:

Hello everyone,

I am trying to use Mummer to differentiate core and accessory chromosomes in some genome assembly files I have. I used the following code to align single query file to the single reference file which seems to work fine.

nucmer -maxmatch -c 100 -p Fop Fol_fasta  Fusox.fasta

But now I want to align multiple query assembly files to a single reference file, but nucmer gave me error on this. I also tried using just Mummer code like this:

mummer -maxmatch -b Necha.fasta  Fsp.fasta Neo.fasta

but I don't get any output. I saw that in MUMmer manual they describe more about single query than multiple query files. Am I doing something wrong here. Could you please help.

Thank you,

Ambika

ADD COMMENTlink written 11 months ago by Ambika30
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2014 users visited in the last hour