Question

SnpEff question for Variant annotation

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4.5 years ago

mandar.bedse • 0

I want to annotate the variant predicted from GRCh38 build. Does SnpEFF use GRCh38?

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ADD COMMENT • link updated 4.5 years ago by kanika.151 ▴ 130 • written 4.5 years ago by mandar.bedse • 0

score 0 · Answer 1 · 2019-11-11

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Entering edit mode

4.5 years ago

kanika.151 ▴ 130

Hello!

This is config file used to download databases as soon as you update or download SnpEFF. snpEff_config which states that there is a provision for GRCh38 build. For future reference.

ADD COMMENT • link 4.5 years ago by kanika.151 ▴ 130