Entering edit mode
4.5 years ago
Loki375
•
0
This is the strain it comes from I would like to know the locus tags of this so far I have CT610 and CT613 but there are more can some one help me find the other ones? Chlamydia trachomatis strain D/UW-3/Cx
GGGCTGACAGAAGCTGTCAGATCATTTTAATAAGATTGATGACAACTACA
ACAAGTTCCTGGATCCAAAAAAGAATCTAAAAAGCCATACAAAGATTGCG
TTACTTCTTGCGATGCCTCTAACACTTTATCAGCGTCATCTTTGAGAAGC
ATCTCAATGAGCGCTTTTTCTTCTCTAGCATGCCGCACATCCGCTTCTTC
ATGTTCTGTGAAATATGCATAGTCTTCAGGATTGGAAAATCCAAAGTACT
CAGTCAATCCACGAATTTTCTCTCTAGCGATACGTGGAATTTGACTCTCA
TAAGAATACAAAGCAGCCACTCCTGCAGCTAAAGAATCTCCTGTACACCA
CCGCATGAAAGTAGCTACTTTCGCTTTTGCTGCTTCACTAGGCTCATGAG
CCTCTAACTCTTCTGGAGTAACTCCTAGAGCAAACACAAACTGCTTCCAC
AAATCAATATGATTAGGGTAACCGTTCTCTTCATCCATCAAGTTATCTAA
CAATAACTTACGCGCCTCTAAATCATCGCAACGACTATGAATCGCAGATA
AATATTTAGGAAAGGCTTTGATATGTAAATAATAGTCTTTGGCATACGCC
TGTAATTGCTCTTTAGTAAGCTCCCCCTTCGACCATTTCACATAAAATGT
GTGTTCTAGCATATGCTTATTTTGAATAATTAAATCTAACTGATCTAAAA
AATTCATAAACACCTCCATCATTTCTTTTCTTGACTCCACGTAACCGCTT
GCAAAAAAGGTCCGTATAAGTCCTCTGTTTCATCTATGCGCAAAGAACAA
TACTCTTCTCGAGAAGTAGGATGTGAATGGTAGACCATATTAGGTGCCTG
CTCTATCACCGCTAACGGTGTTTGCTCATTCCCCTCTCCCATACAAACAA
CAGCCGCAACTGCTAAGGCATCTACAAGATTACTTTGCGTCATCTGTAAG
GGACGACCGAAACAATCTAGCGATCCTATATAGTTGTGTAATGGAGAAAA
TCCATACCAACACAGCCCGATACCCAGTACTCCACGCCGCATTGGAGTAG
TATGGCTATCTGTAATGATTACGCCTAGCTCTTTCACTCGAAAATAATTT
CTTAACCATTCTCCGATGCGATTACACGATCCCAAAATATCTTTAGGATA
TAAAACAAAAGGCTGGTCCGTATTCGATTCATCAATCCCTGCAGAAGGAA
TCAAAATACCTTCTTTTTTCGTTAGATATATCCCGCTTTTCTCACAAAAC
AAATAAGCATCCGCTTCTTTTTTTATCAGCTCTGCTTTGCACATTCTTGC
ATCAGCGACAGCGCCTTCACATAAACTCACAATCTTTGAAGAGACAACTA
CCACACTCCGTTCTTGCAGAGGCGGCAAAGCCTCTTGCAAGATCTCTTGA
AGCGAATCATGTGCAAATACTTTACGTGTTTTGATCGGAGTTATTTTCAT
AATAATAAATACTGAAATCCTCTGTATTACAAATACATTCCTTCTTCCAT
CCTGATAATCGCGTGATAGGGAAGAAAGTATCGCCCCAATATTCCTTTTT
GATATGTGTGACAAAACAAGCTTTCAGAAGGTTTTGTTGGAAAAAACTTT
CAAAGAGCTCCGCTCCCCCAATTAAAAACGGATGATTCAAAGATAGTGTC
CCATACTCTGCAAAGGAAGAAACTCCTATGCATTGTGGTGGATGCATCCT
GCGAGAAAAGACAACGATATCCCGCCCATGCTTATACTTGTCTGGAAGAG
ACTCCCAAGTCTTTCGTCCCATAATGATGGGATGATTTCGAATGGTTTCT
GCAAAAAAACGTAGATCTTCGGGATAACTCCAAGGGAGCTTGCCTAAAGC
TCCCATCACTCCTCTGGGATCAATAGCAACGATACCTGTTGCTTGGATCA
TACAAACATACCAGCCCAAGCAGCAGCGGCTAAGGCACGTCTGTTACCTT
CAACCTGATGCACGCGTAGATAATCAACTCCTCGATCATGAAGAGATACA
GAACAGCCGATCGTTTCCCAATCACGATCGTTACTATTAAATCGGCCCAA
CATACTCAAACACGATTTTCTAGAATGGCCTATTAATACAGGACACTCTA
AAACACGTTTAAACTGCTTTACTCCATCCATCAATAACATCGACTGAACG
GGAGTCTTCCCAAATCCTATTCCTGGATCGAAAACAACTTGCCAACTTGT
ATCTAAACCTACTTGAGCAAATTGTTCTAACTGAGACTCTCCCCAACGCA
ACATTTGCTCAATAGGAGATTCTTCATAAGAAAGTACACAATCTGGTCTT
GGAGGCAGCGAACACGAATGATTTATTAATAGCCGTAGCCCAAACTCCTT
CGCCAAATGAGCCATTTCCAAAGAGCCTCCAGAAACATCATTGATCCAAC
GAATCGGAAATACTTCAACAGCTCGTCGAATAATCTCTGGACGAAATGTA
TCGATAGATACATCAGGGCATTGTTGAGCAGCCCCCCACCGCTCCGCTAA
TAAACGCAAAACAGGTTCTAGACGCTCCCACTCTTGTTCTACGCTTCCTA
AATCTTTTACACGAGGATTGGTTGCTTGCGCCCCTAAATCAATAATAGAA
GCTCCTTCTGCAAAGAGTCTCTCAGCATGGGCTGCGGCTCTTCTCGCCTC
CAGAAACAATCCTGTATCGGAGATCGAGTTATCCGTAATATTAACAATAC
CCATAATTTGGGTAGCAGAACCGAAACTGCCTAACGCATCCTCCTCCGTC
AATGGATAAATAGCAGCAAGCTCTGCAAACGTTTTCCCATTACAAGAAGA
TCCTTCCAAACGGAAACGACGATACGGACATAAAGAAGCTATCATAGAAA
GAAGAAAAGGTCTTTCTAATACCTTAGGATGTGGGATTGTACATTTGTCA
CTATGATAAGAAAAAGCTTCGTCTCCATAGAAAAGCACATCAATATCAAT
CGGTCGAGGCCCCCATTTCAAAGAAGCATCTTGTCCAAAACGACTTTCTA
TCATCTTGATTTCTTCAATCAACTCGTCTGGAGATAGCTGCGTTTCCCCA
ATAACCACAGAGTTAAAATAAGGAAGATCCCATTCTTTCGGAGCCCCTTC
TAACAACAAAGCCTTCGTCTCTAAAATCACAGAACTTTTTAAATTTCGGA
TCCCAGCCTTCTTTAAACTTGCATAAGCGCGTCTTATATGCTCATGCCGG
TTACCTAAATTGGAACCCAAACTTAAACAAACAAAATTCCAACTAGTCAT
GGCACCTCTCTACTTATGCTGAAACTTACAGGACTGAGTAGATCTGGGAT
C
Data for RefSeq sequence for Chlamydia trachomatis strain D/UW-3/Cx.
Using EntrezDirect. Output truncated. Parse things you need from this.
I saw those but It kept telling me it was incorrect.
How many coding sequences is this?
Are you only interested in the piece of sequence you posted in the original question? Solution I showed above will get you locus_tag for entire genome.
You could simply blast the sequence (if that is all you are interested in) against
NC_000117
and get the info you need.