Question

Normal sample from GDC

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4.4 years ago

Ali • 0

Hi

I use two dataset (RNAseq data )of cancer they relatively similar to perform differential gene expression to select list of specific genes for each. But I realise I should do it each type against normal sample I struggle to find normal sample in TCGA & GDC database

Please advice

Kind Regards

RNA-Seq gene • 848 views

ADD COMMENT • link updated 4.4 years ago by Kevin Blighe 87k • written 4.4 years ago by Ali • 0

score 0 · Answer 1 · 2019-11-20

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4.4 years ago

Kevin Blighe 87k

You can infer tumour and normal samples via the TCGA barcode: A: Meaning letters in TCGA sample barcode field

Kevin

ADD COMMENT • link 4.4 years ago by Kevin Blighe 87k

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Thnks Kevin

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Regards

ADD REPLY • link 4.4 years ago by Ali • 0

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It is available for me. Which error message are you receiving?

ADD REPLY • link 4.4 years ago by Kevin Blighe 87k