Question: Visualisation of SNPs in R
2
gravatar for Colari19
6 months ago by
Colari1940
Colari1940 wrote:

Does anyone have any suggestions of how best to visualise SNP locations in relation to their nearest gene? Is there a standard way of doing this? Any good bioconductor packages available?

I have a list of cis-eQTL SNPs along with their target genes (eGenes). I'd like to draw the location of the eQTL in relation to its eGene.

Thank you.

snp R gene • 169 views
ADD COMMENTlink written 6 months ago by Colari1940
2
gravatar for cpad0112
6 months ago by
cpad011213k
India
cpad011213k wrote:

see if this vignette makes sense to you: https://bioconductor.org/packages/release/bioc/vignettes/trackViewer/inst/doc/trackViewer.html

Refer to lolliplot section in the vignette @ Colari19

ADD COMMENTlink written 6 months ago by cpad011213k

Thank you, this is exactly the kind of thing I'm after.

ADD REPLYlink written 6 months ago by Colari1940
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