Question: Finding out gi number (Gene accession) from KO (KEGG orthology) numbers
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gravatar for anis.geb.cu
9 months ago by
anis.geb.cu10
anis.geb.cu10 wrote:

I have 711 essential proteins list of Streptococcus pyogenes MGAS5005 that are predicted by ePATH web server that only provides KO (KEGG ortholog) numbers (along with gene name and gene function) as protein identifier. But I need to find out the gene accession numbers of those proteins. Is there any convenient way to do this?

ADD COMMENTlink modified 9 months ago by julien.fouret.fr20 • written 9 months ago by anis.geb.cu10

Can you provide examples of KO numbers?

ADD REPLYlink written 9 months ago by genomax89k

K01191 K11618 K01035 K05366 K01000 K14227 K14223 Please consider these seven numbers as examples.

ADD REPLYlink written 9 months ago by anis.geb.cu10
0
gravatar for julien.fouret.fr
9 months ago by
julien.fouret.fr20 wrote:

Hi,

I think this might help you : https://www.uniprot.org/uploadlists/

Good luck

ADD COMMENTlink written 9 months ago by julien.fouret.fr20

This may require two steps. If it works. KEGG --> Uniprot --> NCBI Accession.

ADD REPLYlink written 9 months ago by genomax89k
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