Question: Finding out gi number (Gene accession) from KO (KEGG orthology) numbers
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gravatar for anis.geb.cu
6 weeks ago by
anis.geb.cu10
anis.geb.cu10 wrote:

I have 711 essential proteins list of Streptococcus pyogenes MGAS5005 that are predicted by ePATH web server that only provides KO (KEGG ortholog) numbers (along with gene name and gene function) as protein identifier. But I need to find out the gene accession numbers of those proteins. Is there any convenient way to do this?

ADD COMMENTlink modified 6 weeks ago by julien.fouret.fr20 • written 6 weeks ago by anis.geb.cu10

Can you provide examples of KO numbers?

ADD REPLYlink written 6 weeks ago by genomax76k

K01191 K11618 K01035 K05366 K01000 K14227 K14223 Please consider these seven numbers as examples.

ADD REPLYlink written 6 weeks ago by anis.geb.cu10
0
gravatar for julien.fouret.fr
6 weeks ago by
julien.fouret.fr20 wrote:

Hi,

I think this might help you : https://www.uniprot.org/uploadlists/

Good luck

ADD COMMENTlink written 6 weeks ago by julien.fouret.fr20

This may require two steps. If it works. KEGG --> Uniprot --> NCBI Accession.

ADD REPLYlink written 6 weeks ago by genomax76k
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