Several very commonly used annotation databases for human genomes are additionally provided below. In general, users can use -downdb -webfrom annovar in ANNOVAR directly to download these databases. To view of full list of databases (and their size and last changed date) prepared by ANNOVAR developers, use avdblist keyword in -downdb operation
Ok so I tried this
perl annotate_variation.pl -downdb avdblist
And this
perl annotate_variation.pl -downdb -webfrom annovar avdblist
And this
perl annotate_variation.pl -downdb -webfrom avdblist
And other variations and I get no list
WTF is it so hard to give an example of the exact command to use?
Hi, I have same problem:
NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Done NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg38_avdblist.txt.gz ... Failed WARNING: Some files cannot be downloaded, including http://www.openbioinformatics.org/annovar/download/hg38_avdblist.txt.gz is it possible that link is wrong in annotate_variation.pl?