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                    5.9 years ago
        elb
        
    
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    260
    Hi guys, I'm analyzing chromHMM output. I opened the file _dense.bed and *_expanded.bed into IGV and I look the genes mapping into the segments of the segmented file. I would like to ask you if it is possible from the .bed file that has only 4 columns (cur, start of the segment, end of the segment, state) to assign the name of the gene mapping into the segment.
Few lines of my bed file:
 V1     V2    V3   V4
chr10   0   47100  E6
chr10 47100 48900  E4
chr10 48900 49200  E7
..............................
I just would like to add a column with the gene name in the segment
Thank you in advance