Question: Public data to investigate gene regulatory network
gravatar for Shicheng Guo
5 months ago by
Shicheng Guo8.2k
Shicheng Guo8.2k wrote:

Hi All,

I want to find two datasets (discovery and validation) dataset to investigate the regulation network. The ideal dataset includes Gene expression-RNA-seq, DNA methylation, Histone modification data, miRNA data, TF-Chip-seq data. Is there any such kind of public data I can use?

Now I am thinking ENCODE dataset could be taken as a discovery dataset. Is there any similar project dataset that can be used for validation?


regulatory network • 141 views
ADD COMMENTlink modified 5 months ago • written 5 months ago by Shicheng Guo8.2k

This seems incredibly broad. What do you mean by "regulation network"? There are likely very few (if any) datasets that have all of those assays for a given sample or cell type.

ADD REPLYlink written 5 months ago by jared.andrews075.5k
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