psipred error. Unmatched '`'.
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21 months ago

i ran a psipred command of pgenthreade.sh script tcsh psipred /media/kakarot/ppi/genthreader/sequence.iter3.mtx /media/kakarot/ppi/psipred/data/weights.dat /media/kakarot/ppi/psipred/data/weights.dat2 /media/kakarot/ppi/psipred/data/weights.dat3 > /media/kakarot/ppi/genthreader/sequence.pgen.ss

it results in

Unmatched '`'.

anyone please can help

tcsh linux shell psipred • 407 views
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Instead of using bold please use the code button to present your code/errors so they are readable.
code_formatting

Are you just walking down a set of command lines in some tutorial/manual? There is nothing immediately apparent in why you are getting that error from the snippet you posted above.

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I saw your previous message that I should use code instead of bold, after I posted this question. I am using this command from the pgenthreader.sh script. because that script is encounter with the error PSIPRED failed...exiting early. So, I tried to run the PSIPRED command separately on shell...so that I can find out where the actual problem is.

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Please use ADD REPLY/ADD COMMENT when responding to existing posts to keep threads logically organized. SUBMIT ANSWER box is for new answers to the original question.

You can edit your own original post and format it correctly.

As posted now there is no useful information in that command. Perhaps you should edit the post, add full context of what you are trying to do.

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