Available annotation file for the PacBio Iso-seq data

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3.0 years ago

Sara ▴ 220

I am working with Iso-seq data from PacBio looking for the new transcripts. but when I follow their pipeline at the end the IDs are like these examples:

gene_id "PB.3"; transcript_id "PB.3.1"

so, my question is that is there any annotation file for the PacBio IDs and data?

sequencing • 726 views

ADD COMMENT • link updated 19 months ago by GenoMax 125k • written 3.0 years ago by Sara ▴ 220

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Hi Sara,

I also have the same question. I wasn't immediately able to find an obvious annotation file to convert these pacbio IDs to HGNC or ENSG IDs. Were you able to find anything?

Best, Michael

ADD REPLY • link 19 months ago by michael.j.apostolides ▴ 30

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Not familiar with IsoSeq pipeline specifically but if these are "new" transcripts then you will need to do some blast searching to annotate them?

ADD REPLY • link 19 months ago by GenoMax 125k

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