Question: How to identify all exons and cds in gene?
0
gravatar for isoBA
4 weeks ago by
isoBA0
isoBA0 wrote:

I have a S100A1 gene. In NCBI in CDS regions

https://www.ncbi.nlm.nih.gov/nuccore/AB195559.1

I got two numbers so it's two cds regions.

CDS join(1..141,224..373)

But that gene has 3 exons:

https://www.ncbi.nlm.nih.gov/gene/?term=Danio+Rerio+S100A1

Will somebody explain to me why, to allay my doubts? I mean why it has 3 exons but only 2 cds?

And If I understand correctly thats 2 cds are just regions from first fasta files located at: 1:141 and 224:37 positions?

dna exon cds gene • 154 views
ADD COMMENTlink modified 4 weeks ago by Pierre Lindenbaum126k • written 4 weeks ago by isoBA0

also: Still confused about exons versus CDS

ADD REPLYlink written 4 weeks ago by Pierre Lindenbaum126k
1
gravatar for Pierre Lindenbaum
4 weeks ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum126k wrote:

I mean why it has 3 exons but only 2 cds

LIFE.

One exon doesn' mean that there is an associated CDS. Think about all those non-coding RNA...

ADD COMMENTlink written 4 weeks ago by Pierre Lindenbaum126k
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