Off topic:how can i get p value from miRNA raw reads counts?
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15 months ago

.working on lung cancer project and need to find out which genes are deferentially expressed and which are not. for that i a have downloaded miRNA data set from GEO id is GSE110907. And the file i got has to variable gene_id and read counts. from that i have to derive p value from that data/file.

example:

input file :

id read_count hsa-miR-100-3p 568 hsa-miR-100-5p 176883 hsa-miR-101-3p 122968 hsa-miR-101-5p 923 output file:

id read_count p value hsa-miR-100-3p 568 ? hsa-miR-100-5p 176883 ? hsa-miR-101-3p 122968 ? hsa-miR-101-5p 923 ?

R miRNA p value • 291 views
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