Removing Contigs and Redundant Sequences.
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14 months ago

After finishing the assembly, I am left out with contigs and redundant sequences which I have no clue as how to remove them from my data. Many online sources suggested using CD-Hit, but I am unable to understand that. Can anybody help in this regards.?

Assembly gene next-gen sequencing • 564 views
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I am left out with contigs and redundant sequences

What do you mean by that? You have contigs and suspect some of those are redundant?

Many online sources suggested using CD-Hit, but I am unable to understand that

CD-HIT is a suite of programs that will remove redundancy in your dataset leaving unique sequences behind.

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Thank you so much for the help. But I still cannot make progress with that. Is there any good paper which i can cite for the issue mentioned.?

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