Removing Contigs and Redundant Sequences.

0

Entering edit mode

4.3 years ago

vishalchanda364 ▴ 20

After finishing the assembly, I am left out with contigs and redundant sequences which I have no clue as how to remove them from my data. Many online sources suggested using CD-Hit, but I am unable to understand that. Can anybody help in this regards.?

Assembly gene next-gen sequencing • 1.5k views

ADD COMMENT • link 4.3 years ago by vishalchanda364 ▴ 20

0

Entering edit mode

I am left out with contigs and redundant sequences

What do you mean by that? You have contigs and suspect some of those are redundant?

Many online sources suggested using CD-Hit, but I am unable to understand that

CD-HIT is a suite of programs that will remove redundancy in your dataset leaving unique sequences behind.

ADD REPLY • link 4.3 years ago by GenoMax 141k

0

Entering edit mode

Thank you so much for the help. But I still cannot make progress with that. Is there any good paper which i can cite for the issue mentioned.?

ADD REPLY • link 4.3 years ago by vishalchanda364 ▴ 20

Login before adding your answer.