GFF file for soybean RNAseq analysis
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3.8 years ago
MAPK ★ 2.1k

I am trying to do RNA-seq analysis for soybean datasets. I was looking at soybase (link: https://soybase.org/dlpages/#datastore ), but couldn't find the associated gff files. Could someone please direct me to the right gff files. Thank you for your help in advance.

RNA-Seq • 1.0k views
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3.8 years ago
Brice Sarver ★ 3.8k

The Ensembl page for Glycine max. You can find GFF3s under 'Gene annotation.'

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Thank you. I ended up using NCBI's: https://www.ncbi.nlm.nih.gov/genome/?term=txid3847[Organism:noexp]

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