Convert VCF to mpileup/synchronized format
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20 months ago
aniqaejaz220 ▴ 30

Hiii, I have a VCF file and i want Sync file (usually an output from popoolation2 tool), otherwise mpileup file. I need tool/ command for any of these two conversions. I am working on Ubuntu terminal (Linux). Please help me out!! Basically i need Synchronized file for Fst analysis.

Thanks in advance

VCF mpileup popoolation tool synchronized format • 514 views
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What have you tried? Have you looked at this post? Converting vcf to pileup

Spoiler alert: You'll need the BAM files and the reference genome.

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Thanks for sharing this post.

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