How to perform normalization and calculate when there are multiple groups ?
0
0
Entering edit mode
4.2 years ago
Karma ▴ 310

I have 4 sample [control, pre-treatment, post-treatment, metastais] with 4 replicates which make total 4x4 = 16 samples I want to perform comparison of control with all other groups. For the said purpose should I perform normalization of all samples and perform ANOVA to find significant DEGs in each group

OR

Group the sample according to the need like "control x pre-treatment" and perform separate normalization for each comparison and find the DEGs What is the difference of 1st with the second?

RNA-Seq ANOVA Normalization • 990 views
ADD COMMENT

Login before adding your answer.

Traffic: 2905 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6