Hello all, I am working on exome-seq data of 30 samples(tumor and matched normal) and using gatk-184.108.40.206 for the analysis of somatic mutations but got stuck in the second step of creation of panel of Normals. I am using a bed file provided by sequencing company(10MB) as an interval list file but it's taking too much time for running and space too.. and end up with error: **GenomicsDBConfigException : Syntax error in JSON file Please suggest me how can i resolve it?
Question: Creating a GenomicsDBImport from the normal Mutect2 calls
6 weeks ago by
supriya.awasthy • 0
supriya.awasthy • 0 wrote:
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