I'm trying to run kraken v.1.1.1 to perform an analysis of metagenomic data, but when I try to give the
kraken-build -standard --threads 20 --db MY_KRAKEN_DATABASE
command, the following error appears:
Downloading taxonomy tree data ... rsync: error while loading shared libraries: libiconv.so.2: cannot open shared object file: No such file or directory
The program was installed with conda, I tried to install kraken2 to check if it was the program version, but the same error occurred. I'm new to bioinformatics and programming, if anyone can help me solve this problem, it would help a lot.
Downloaded taxonomy tree data
Uncompressing taxonomy data... done.
Untarring taxonomy tree data... done.
Step 1/3: performing rsync dry run...
Rsync dry run complete, removing any non-existent files from manifest.
Step 2/3: Performing rsync file transfer of requested files
rsync: error while loading shared libraries: libiconv.so.2: cannot open shared object file: No such file or directory
rsync_from_ncbi.pl: rsync error, exited with code 127
Try to install libiconv package by typing
conda install -c conda-forge libiconv
The moment you sent this message, I installed libsconv with conda and it worked, he downloaded this part, however, now another error has appeared, related to ncbi:
Hi, Did you get the solution for your error? If yes, please can you share with me? I got the same error.