In WGCNA, how to find the results for each modules (summary)?
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2.2 years ago
149abhi ▴ 10

Does we require clinical trait data. If yes than where will i get clinical trait data for my dataset. Most importantly, I want the result of each modules (summary). Someone kindly help me with code?

r gene • 542 views
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2.2 years ago

Does we require clinical trait data.

That is a question that you need to ask yourself and / or your colleagues. The idea of using clinical trait data is to determine whether or not any of the identified modules are statistically significantly associated with any of the clinical traits. For example, 'pink module' may be associated with disease status, so, we would explore further the genes in the pink module.

If yes than where will i get clinical trait data for my dataset.

Ask your supervisor.

Most importantly, I want the result of each modules (summary). Someone kindly help me with code?

See part 3 (search for 'Relating modules to external clinical traits and identifying important genes'), here:

Kevin

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