Question: Using EBI protein API with uniprot isoforms
gravatar for vkkodali
5 months ago by
United States
vkkodali2.0k wrote:

I am trying to use the EBI Proteins REST API described here. Specifically, I would like to use the coordinates API to fetch genomic coordinates of a UniProt accession. While using an accession with range such as (Q93077:47-72) works, specifying the UniProt isoform, P84550-3:474-484 for example, does not. Does anyone know if there is a way to query the API with a specific UniProt isoform?

$ curl -X GET --header 'Accept:application/json' ''

$ curl -X GET --header 'Accept:application/json' ''
{"requestedURL":"","errorMessage":["Can not find coordinates for accession: {P84550-3}"]}
swiss-prot uniprot ebi • 121 views
ADD COMMENTlink modified 5 months ago by JC11k • written 5 months ago by vkkodali2.0k
gravatar for JC
5 months ago by
JC11k wrote:

I believe that API only features the main protein, so became:

$ curl -X GET --header 'Accept:application/json' ''
ADD COMMENTlink written 5 months ago by JC11k
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