How to compare LTR's using blast in unix?
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19 months ago
netanelxa • 0

I've downloaded package of LTR's in a specific organism from table browser, and i want to compare them between themselves in order finding missmatch mutations and to realize who is "older". what is the right command? thanks.

alignment sequence • 270 views
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blast is likely going to be step 1 indeed. But as I mention "step 1" you should realise that this is a process consisting of several steps. Moreover, "dating" LTRs is quite a specific analysis (though it can and has been done).

For more detailed info I suggest you google around, there are tools/pipelines/guidelines available on the internet explaining this. (if you are still stuck, then we would be happy to assist you further)

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