Question: RepeatMasker data download
gravatar for devarora
10 months ago by
devarora270 wrote:

Dear friends, I was downloading repeatmasker data from UCSC. If anyone know about the availability of Capra hircus (goat) repeatmasker data do share the information. I am trying running RepeatMasker on goat in server but it is taking much time.

ucsc repeatmasker assembly • 305 views
ADD COMMENTlink modified 12 weeks ago by Biostar ♦♦ 20 • written 10 months ago by devarora270
gravatar for Luis Nassar
9 months ago by
Luis Nassar420
UCSC Genome Browser
Luis Nassar420 wrote:


We have built assembly hubs for many assemblies (including goat), these include RM tracks:

That download data can be found in the following directory:

There you will see a few different repeat masker files which correspond to the different repeat element tracks:             26-Jan-2020 21:47   18M            26-Jan-2020 21:47   72M             26-Jan-2020 21:47   25M  26-Jan-2020 21:48  4.2M           26-Jan-2020 21:48  528K             26-Jan-2020 21:48  718K            26-Jan-2020 21:47   86M       26-Jan-2020 21:48  8.9M          26-Jan-2020 21:48   20M

Keep in mind these are bigBed files, if you are unfamiliar with that format you can find more information here:

If you have any further questions, you can email us at We do periodically check biostars, in which case, using the UCSC tag is the best way to ensure visibility.

ADD COMMENTlink written 9 months ago by Luis Nassar420
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