Entering edit mode
4.1 years ago
aj
•
0
Hi,
I've run gwas logistic regression on UKBio data using plink2 geneXenvironment interaction with HB category. The results output look like this for example:
CHROM POS ID REF ALT A1 FIRTH? TEST OBS_CT OR LOG(OR)_SE Z_STAT P ERRCODE
22 160... rs587XX C A A N ADD 2... 0.21 4.36 -0.351 0.72
22 160... rs587XX C A A N HBcat 2... 3.87 0.06 21.27 1.86e-100
22 160... rs587XX C A A N ADDxHBcat 2... 1.30 2.38 0.11 0.911
How can I combine all of the interaction terms and main SNP effects to get HB-category-specific ORs for each SNP? Can I even do it with the output given or do I need the beta coefficients?
Any help is appreciated,
AJ
Please elaborate some more on what you want to do, and please show the command(s) that you used to generate the current output. Please elaborate on "HB-category-specific ORs"