Question: How to interpret logistic interaction results from plink2 output?
0
gravatar for aj
3 months ago by
aj0
aj0 wrote:

Hi,

I've run gwas logistic regression on UKBio data using plink2 geneXenvironment interaction with HB category. The results output look like this for example:

CHROM POS ID REF ALT A1 FIRTH? TEST OBS_CT OR LOG(OR)_SE Z_STAT P ERRCODE

22 160... rs587XX C A A N ADD 2... 0.21 4.36 -0.351 0.72
22 160... rs587XX C A A N HBcat 2... 3.87 0.06 21.27 1.86e-100
22 160... rs587XX C A A N ADDxHBcat 2... 1.30 2.38 0.11 0.911

How can I combine all of the interaction terms and main SNP effects to get HB-category-specific ORs for each SNP? Can I even do it with the output given or do I need the beta coefficients?

Any help is appreciated,

AJ

ADD COMMENTlink modified 3 months ago • written 3 months ago by aj0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1612 users visited in the last hour