How bedtools genomecov handles reads without both ends mapped in paired sequencing
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19 months ago
rimelof • 0

Hello,

I Have some paired end rna-seq where some reads don't have both ends mapped. When I run bedtools genomecov how does it handles those reads? And if somehow those reads are counted towards the coverage, do they carry the same weight of a read with both ends mapped?

Thanks!

rna-seq coverage bedtools paired • 386 views
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