CIBERSORT input file format
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20 months ago
Sara ▴ 180

I have RNAseq data and their count table. now I would like to use CIBERSORT https://cibersort.stanford.edu/ but it is not clear what the format of its input is. do you guys know what the CIBERSORT input file format is?

RNA-Seq CIBERSORT • 2.1k views
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15 months ago
ShahiRB ▴ 20

It is clearly mentioned here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5895181/ . But the authors recommend CIBERSORTx, the next generation version of CIBERSORT, with support for single-cell RNA-seq and cell type-specific gene expression purification.

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CIBERSORTx used no-negative matrix decomposition or not?

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