Question: Public Rnaseq/Dnaseq Data
2
gravatar for xenophiliuslovegood
4.9 years ago by
xenophiliuslovegood160 wrote:

Hi,

I understand this might be a long shot, but : is anybody aware of a public dataset which contains RNAseq and DNAseq performed on the same individual?

rna-seq • 2.0k views
ADD COMMENTlink modified 4.6 years ago by Sander Timmer690 • written 4.9 years ago by xenophiliuslovegood160

Just for my knowledge, what do you refer to as 'dnaseq'!

ADD REPLYlink written 4.9 years ago by Sukhdeep Singh8.7k

with "DNAseq data" I refer to reads produced by sequencing a molecule of DNA.

ADD REPLYlink written 4.9 years ago by xenophiliuslovegood160

normally people would just call that sequencing or if you're just interesting in the variation (like SNPs) genotyping.

ADD REPLYlink written 4.9 years ago by Sander Timmer690

That clears, this is what I had in mind, dnaseq is just the normal dna sequencing, I thought it might be a some variation of chip-seq as it was used in the context of rna-seq

Cheers

ADD REPLYlink written 4.9 years ago by Sukhdeep Singh8.7k
4
gravatar for Sander Timmer
4.9 years ago by
Sander Timmer690
United Kingdom
Sander Timmer690 wrote:

This recent paper in Nature they have RNA-seq and DNase-seq for 70 YRI lines that are also part of the HapMap (and most 1000 genomes) LCLs.

http://www.nature.com/nature/journal/v482/n7385/full/nature10808.html

Data from this paper can be found here: http://eqtl.uchicago.edu/Home.html

/edit, if I understand your second command you mean genotype data + RNA-seq data only? then for 60 CEU lines you can obtain RNA-seq data here: http://funpopgen.unige.ch/data/ceu60

These lines are again HapMap/1000 Genomes LCLs.

ADD COMMENTlink modified 4.9 years ago • written 4.9 years ago by Sander Timmer690
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