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• CASAVA-1.8.2 Installation Error
  Hi everyone, I'm trying to install illumina's software CASAVA-1.8.2, but there are some problems...
• Casava 1.8 Vs Gatk
  The illumina sequenchers came with its own analysis pipeline programs, using ELAND2 for alignment...
• Converting Eland Sorted.Export To Eland Results
  Hi, I am wondering that if anyons knows how to convert eland alignment files (s*sorted.txt/s*expo...
• Automation And Post Processing Casava 1.8 Output
  Moving from previous versions of Illumina's CASAVA pipeline to CASAVA 1.8, there are a number of ...
• Where to download vcf2sqlite tool and are there any similar available somewhere?
  Where to download vcf2sqlite tool and are there any similar available somewhere?
• Running Casava Under Ubuntu 11.04
  Hey Guys, trying to install CASAVA 1.8.1 on Ubuntu 11.04. Has anyone of you done it already...be...
• Casava Snps.Txt And Indels.Txt To Vcf Files
  Hi all, I use the CASAVA pipeline with a GAIIx sequencer. Output, I get the BAM files and snps.tx...
• [Casava] Error: Barcode Cttgta For Lane 1 Has Length 6: Expected Barcode Lenth Is 7
  That's the first time I'm using Casava to generate my fastq files. My command line was: /path/t...
• "Segmentation fault (core dumped)" using sickle for trimming, depending on options used
  Hello, I'm running into "Segmentation fault (core dumped)" error when running a workflow with (...
• Downloading Solid Accuracy Enhancement Tool
  Where can I download the SOLiD accuracy enhancement tool? Apparently the official link at solidso...
• Demultiplexing fastq files. Undocumented Illumina feature.
  I am building a full blown fastq/sff editor:  https://www.biostars.org/p/98851 While building th...