Question: an problem occuring when using fastq_quality_filter
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5 months ago by
54354165620
54354165620 wrote:

how can i sove the problem when i execute the following command?? gunzip -c 9311/9311_2.Rn.1.gz | fastq_quality_filter -Q 33 -v -q 30 -p 90 -z -o 9311/q30p90/9311_2.RnFq30p90.1.gz Segmentation fault (core dumped)

ADD COMMENTlink written 5 months ago by 54354165620

fastq_quality_filter is probably not able to read from a pipe|STDIN. You can use reformat.sh from BBMap suite. A guide is available here.

ADD REPLYlink written 5 months ago by genomax91k
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