Whole-genome human-mouse syntenic block tracks/database

Question

[Papyrus]

Dear all,

I'm trying to find whole-genome tracks of syntenic blocks between human and mouse (hg38-mm10). I've seen several web applications and such, but most are focused on specific regions or genes. Do you know a repository where I can find and download the tracks. I'm sure I must have missed it. I suppose the files would have to look something like (made-up example):

hs_chr  hs_start    hs_end  mm_chr  mm_start    mm_end  block_ID
1   3205901 9299878 8   49909789    55526155    1
1   9545408 17766344    8   66429028    75034558    2

thanks!

[GenoMax]

This Mouse Genome Informatics (MGI) page contains information about vertebrate homologies.

Answer 1

[Arup Ghosh]

The following portal can generate synteny blocks for multiple species. http://bioinfo.konkuk.ac.kr/synteny_portal/htdocs/synteny_builder.php

[Papyrus]

Thanks a lot! I will use this