Rearrange contigs to start with repA
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3.8 years ago

Hello,

I have a contig with replicon of plasmid. I'd like to make the contig starts from repA. How could I do it?

A lot of thanks, Valery

Assembly Plasmid • 896 views
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Did you succeed in rotating the contigs to start at repA using Circlator? If so, may I ask which commands you've used using Circlator for retrieving the RepA UniProt entries https://github.com/sanger-pathogens/circlator/wiki/Task:-get_dnaa

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3.8 years ago
Asaf 10k

You can use Circlator fixstart: https://github.com/sanger-pathogens/circlator/wiki/Task%3A-fixstart

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