Question: SnpEff with files from 1001 genomes (sequences from Arabidopsis thaliana).
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gravatar for brunotgaraupaula
5 months ago by
brunotgaraupaula0 wrote:

Hello! Did someone download the files from 1001 genomes (in vcf format) and worked well in SnpEff? When I try to use these files in SnpEff it appears the following: (error: cannot read the input file). Thanks!

software error • 128 views
ADD COMMENTlink written 5 months ago by brunotgaraupaula0

Please share the command you are using.

ADD REPLYlink written 5 months ago by Arup Ghosh2.7k

I run the following command: " java -Xmx4g -jar snpEff.jar Arabidopsis_thaliana 108_snpeff>ejemplo.ann.vcf", and then appears the following message: "Error : Cannot read input file '108_snpeff'" .

Thanks and best regards.

ADD REPLYlink written 4 months ago by brunotgaraupaula0
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