SnpEff with files from 1001 genomes (sequences from Arabidopsis thaliana).

Question

[brunotgaraupaula]

Hello! Did someone download the files from 1001 genomes (in vcf format) and worked well in SnpEff? When I try to use these files in SnpEff it appears the following: (error: cannot read the input file). Thanks!

[Arup Ghosh]

Please share the command you are using.

[brunotgaraupaula]

I run the following command: " java -Xmx4g -jar snpEff.jar Arabidopsis_thaliana 108_snpeff>ejemplo.ann.vcf", and then appears the following message: "Error : Cannot read input file '108_snpeff'" .

Thanks and best regards.