Question: How to find a RNA RNA Intraction dataset for classification task?
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gravatar for M
9 days ago by
M0
M0 wrote:

I want to test a classification algorithm. I need a dataset with both positive tags and negative ones. actually I want to get two RNA seq as input and have a tag that if they are intractable or not. Is anyone there to help me about finding a dataset?

rna-seq • 69 views
ADD COMMENTlink modified 9 days ago • written 9 days ago by M0

What kind of RNA-RNA interactions? Would bacterial sRNAs be interesting?

ADD REPLYlink written 9 days ago by Asaf7.6k

Yes of course, there is no difference.

ADD REPLYlink written 8 days ago by M0

I can direct you to my papers: https://www.sciencedirect.com/science/article/pii/S1097276516304130 There's a table in the supplementry. There isn't a good database of bacterial sRNA interactions but I heard it's in the making. You can also check out CLASH results for miRNA but there is a lot of involvement of the Ago protein, there's always a protein involved but I think that in miRNA it's really essential

ADD REPLYlink written 7 days ago by Asaf7.6k
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