Question: Get data from SRA with just SAMN IDs
gravatar for mark.dunning
3 days ago by
The University of Sheffield
mark.dunning210 wrote:


We have student that would like to analyse and RNA-seq data for a project. According to the publication, the fastq files are open access and available

However, the only IDs I can find are "SAMN".

I'm familiar with sra-toolkit, but to use that I need the SRR IDs. Does anyone know how I can find these IDs for this dataset?



rna-seq fastq sra ncbi • 47 views
ADD COMMENTlink written 3 days ago by mark.dunning210

Hmm, I do not see any references to the actual sequencing data at SRA, nor any relevant entries for the bioproject when querying ENA or

Maybe your best chance is to contact the authors.

ADD REPLYlink written 3 days ago by ATpoint34k
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