snpeff disable intragenic
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2.4 years ago
2nelly ▴ 310

Hi all,

Does someone know how to disable intragenic flag in snpeff annotation like for upstream downstream splice exon etc? I know that there is a description about intragenic variant in snpeff website. However, I noticed that these variants are falling in intergenic, intronic or utr regions of non coding genes and I would like to set priority on these annotations over the intragenic.

Any suggestion is appreciated.

No need to suggest me other annotation tools, as I am aware of them. I just need a potential solution to my specific question.

Thank you

sequencing snp Annotation • 445 views
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