Question: Error while running kissDE
0
gravatar for za.nemati
6 months ago by
za.nemati0
za.nemati0 wrote:

Hi there,

Actually, I am trying to run kissDE version 1.8.0 on results_cond1_cond2_k41_coherents_type_0.fa file which I got from kissplice.

After running the following commands:

snp <-kissplice2counts("results_Cs1_R1_Cs1_R2_Cs2_R1_Cs2_R2_Cc1_R1_Cc1_R2_Cc2_R1_Cc2_R2_k41_coherents_type_0a.fa", pairedEnd=TRUE, counts=0)

CsCc_conditions<-c("Cs","Cs","Cc", "Cc")

res<-diffExpressedVariants(snp, human_conditions, pvalue=1)

write.table(res$finalTable, file="kissDE_output", sep="\t", quote=FALSE)

I got the following error:

Error in matrix(unlist(split2), nrow = 3) :
'data' must be of a vector type, was 'NULL'

Could you please let me know how I can fix it?

Many thanks

Zahra

snp • 127 views
ADD COMMENTlink modified 6 months ago by genomax92k • written 6 months ago by za.nemati0
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