Entering edit mode
3.9 years ago
za.nemati
•
0
Hi there,
Actually, I am trying to run kissDE version 1.8.0 on results_cond1_cond2_k41_coherents_type_0.fa file which I got from kissplice.
After running the following commands:
snp <-kissplice2counts("results_Cs1_R1_Cs1_R2_Cs2_R1_Cs2_R2_Cc1_R1_Cc1_R2_Cc2_R1_Cc2_R2_k41_coherents_type_0a.fa", pairedEnd=TRUE, counts=0)
CsCc_conditions<-c("Cs","Cs","Cc", "Cc")
res<-diffExpressedVariants(snp, human_conditions, pvalue=1)
write.table(res$finalTable, file="kissDE_output", sep="\t", quote=FALSE)
I got the following error:
Error in matrix(unlist(split2), nrow = 3) :
'data' must be of a vector type, was 'NULL'
Could you please let me know how I can fix it?
Many thanks
Zahra