Question: Converting gam to gaf
0
gravatar for hmg
6 months ago by
hmg20
Canada
hmg20 wrote:

I noticed it is now possible to output alignments in gaf files instead of gam, which is great! How difficult would it be to convert gam to gaf? Gaf is definitely easier to parse than using jq for the json conversion of gam, but I'd like to avoid realigning all my previous work. Are there plans to make a gaf output option for vg view?

vg • 192 views
ADD COMMENTlink modified 5 months ago by glenn.hickey170 • written 6 months ago by hmg20
1
gravatar for glenn.hickey
5 months ago by
glenn.hickey170
glenn.hickey170 wrote:

GAF will gradually be more tightly integrated with all the tools. In the meantime, you can convert back and forth between GAM and GAF with vg convert -F and -G

ADD COMMENTlink written 5 months ago by glenn.hickey170
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