Question: Question about the parameter -fs in bedtools.
gravatar for Spencer
8 months ago by
Spencer20 wrote:

Hi, i have recently learned Bedtools,but i'm not totally understand the parameter -fs. For example,in the chip-exo pipeline in order to generate stranded read counts trim 1,using -fs. Code as following: bedtools genomecov -ibam bamfile -fs 1 -d -strand + bedtools genomecov -ibam bamfile -fs 1 -d -strand - So what exactly does it do?


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ADD COMMENTlink modified 8 months ago • written 8 months ago by Spencer20
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