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Question: reorder contigs into scaffold?
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gravatar for mrj
6 months ago by
mrj • 20
mrj • 20 wrote:

I have N100 contigs (300 of them). How can I order them to a reference genome? What tool should I use? I will be thankful to you if you can answer to those questions.
scaffold contig assembly • 189 views
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modified 6 months ago by ugurcabuk • 130 • written 6 months ago by mrj • 20
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gravatar for ugurcabuk
6 months ago by
ugurcabuk • 130
Turkey
ugurcabuk • 130 wrote:

What kind of organism ? Please, give more information. However, There are some tools to make it.

Contiguator ABACAS Mauve

If it is bacteria, the article, Approaches for in silico finishing of microbial genome sequences, can give you some ideas
ADD COMMENT • link written 6 months ago by ugurcabuk • 130

This is a fungi. I was able to use Mauve. It worked fine. Thanks!

ADD REPLY • link written 6 months ago by mrj • 20
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