Question: reorder contigs into scaffold?
0
gravatar for mrj
6 months ago by
mrj20
mrj20 wrote:

I have N100 contigs (300 of them). How can I order them to a reference genome? What tool should I use? I will be thankful to you if you can answer to those questions.

scaffold contig assembly • 189 views
ADD COMMENTlink modified 6 months ago by ugurcabuk130 • written 6 months ago by mrj20
2
gravatar for ugurcabuk
6 months ago by
ugurcabuk130
Turkey
ugurcabuk130 wrote:

What kind of organism ? Please, give more information. However, There are some tools to make it.

Contiguator ABACAS Mauve

If it is bacteria, the article, Approaches for in silico finishing of microbial genome sequences, can give you some ideas

ADD COMMENTlink written 6 months ago by ugurcabuk130

This is a fungi. I was able to use Mauve. It worked fine. Thanks!

ADD REPLYlink written 6 months ago by mrj20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2401 users visited in the last hour
_