Question: Ensembl Ids To Gene Name Conversion
3
gravatar for jill.mckay
7.0 years ago by
jill.mckay30
jill.mckay30 wrote:

I have an extensive list of Ensembl Ids that I need to convert to genes names and wondered if anyone knows any web based software to do this quickly?

gene ensembl • 43k views
ADD COMMENTlink modified 10 weeks ago by liangj0 • written 7.0 years ago by jill.mckay30
2

The website linked below, 'gene ID converter' is also a fast and straightforward way to do this. Though I would agree with Alastair that Biomart is the gold standard for this task. http://idconverter.bioinfo.cnio.es/

ADD REPLYlink written 7.0 years ago by Rubal7760
1

These applications are no longer working

ADD REPLYlink written 3.6 years ago by MarcinKosinski10

both those links don't work now. You can try your luck with mygene or DAVID, but I'm having problem with things starting with ENSMUSP

ADD REPLYlink written 10 weeks ago by liangj0
10
gravatar for Alastair Kerr
7.0 years ago by
Alastair Kerr5.2k
The University of Edinburgh, UK
Alastair Kerr5.2k wrote:

Use Biomart from the Ensembl site. 'Filter' your query based on your Ensembl ids make sure the Gene name is checked under the 'Attributes'.

or

Click on id mapping from Uniprot and download the link 'UniProtKB'

ADD COMMENTlink written 7.0 years ago by Alastair Kerr5.2k

Just update the ensembl url.

ADD REPLYlink written 23 months ago by Zhilong Jia1.4k
0
gravatar for Paolo
7.0 years ago by
Paolo230
Trieste
Paolo230 wrote:

An other choice is The Synergizer repository of gene and protein identifier synonym relationships created by the Roth Laboratory.

ADD COMMENTlink written 7.0 years ago by Paolo230
0
gravatar for Michi
7.0 years ago by
Michi950
Barcelona
Michi950 wrote:

I recommend you the ID converter from Biomart Central:

http://central.biomart.org/

It is similar to Alistair's proposition, but a bit less effort.

ADD COMMENTlink modified 7.0 years ago • written 7.0 years ago by Michi950

Can any one tell me how to convert the gene names to ENSEMBLE ID's? I have the gene names as output for my cuffdiff results and I want to convert them to ENSEMBLE ID, but am confused chosing the attributes in the biomart webiste. Can anyone tell me what should be the parameters?

ADD REPLYlink written 5.0 years ago by ivivek_ngs4.8k
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