Ensembl Ids To Gene Name Conversion
3
3
Entering edit mode
11.8 years ago
jill.mckay ▴ 30

I have an extensive list of Ensembl Ids that I need to convert to genes names and wondered if anyone knows any web based software to do this quickly?

gene ensembl • 49k views
ADD COMMENT
2
Entering edit mode

The website linked below, 'gene ID converter' is also a fast and straightforward way to do this. Though I would agree with Alastair that Biomart is the gold standard for this task. http://idconverter.bioinfo.cnio.es/

ADD REPLY
1
Entering edit mode

These applications are no longer working

ADD REPLY
0
Entering edit mode

both those links don't work now. You can try your luck with mygene or DAVID, but I'm having problem with things starting with ENSMUSP

ADD REPLY
10
Entering edit mode
11.8 years ago

Use Biomart from the Ensembl site. 'Filter' your query based on your Ensembl ids make sure the Gene name is checked under the 'Attributes'.

or

Click on id mapping from Uniprot and download the link 'UniProtKB'

ADD COMMENT
0
Entering edit mode

Just update the ensembl url.

ADD REPLY
0
Entering edit mode
11.8 years ago
Paolo ▴ 320

An other choice is The Synergizer repository of gene and protein identifier synonym relationships created by the Roth Laboratory.

ADD COMMENT
0
Entering edit mode
11.8 years ago
Michi ▴ 990

I recommend you the ID converter from Biomart Central:

http://central.biomart.org/

It is similar to Alistair's proposition, but a bit less effort.

ADD COMMENT
0
Entering edit mode

Can any one tell me how to convert the gene names to ENSEMBLE ID's? I have the gene names as output for my cuffdiff results and I want to convert them to ENSEMBLE ID, but am confused chosing the attributes in the biomart webiste. Can anyone tell me what should be the parameters?

ADD REPLY

Login before adding your answer.

Traffic: 1035 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6