I am trying to convert GTEx v8 ensemble gene ids (+version) to gene names using biomart's archived ensembl version that corresponds to GTEx v8 (version 85). Example:
geneIDs=c("ENSG00000227232.5", ... ,"ENSG00000268903.1") mart = useEnsembl(biomart="ensembl", dataset="hsapiens_gene_ensembl", version=85) ensm=getBM(attributes=c("ensembl_gene_id", "external_gene_name"), filters = "ensembl_gene_id", values = geneIDs, uniqueRows=F, mart=mart)
I am getting no matches. I believe I need to use the attribute "ensembl_gene_id_version" but this option does not appear to exist in biomart's archived ensembl version 85 when checking here:
Any input would be much appreciated! Thank you.