Entering edit mode
5.3 years ago
ancient_learner
▴
680
Hi, Greetings! I have a list of K-mers (Human) like below
AAGTGCG
GGCGGCT
ACGTGGCA
TGCGTGGG
TGGCGTGA
Some of these K-mers may be serving as binding sites for TFs and some may be just the repeats. I want to annotate these K-mers with TFs. Wondering if there is a tool already which helps me get the outcome (without me converting it to fasta format and trying with PWMs) but would provide the Name of the TF, Accuracy of the site, The Actual Binding site Ideally like below
My Input Name of TF Accuaracy Actual Binding
GGCGGGAA E2F3 9.3/10 GGCGGGA