Annotate the K-mers of same length with TFs
1
0
Entering edit mode
3.8 years ago

Hi, Greetings! I have a list of K-mers (Human) like below

AAGTGCG
GGCGGCT
ACGTGGCA
TGCGTGGG
TGGCGTGA

Some of these K-mers may be serving as binding sites for TFs and some may be just the repeats. I want to annotate these K-mers with TFs. Wondering if there is a tool already which helps me get the outcome (without me converting it to fasta format and trying with PWMs) but would provide the Name of the TF, Accuracy of the site, The Actual Binding site Ideally like below

My Input        Name of TF      Accuaracy     Actual Binding 
GGCGGGAA        E2F3             9.3/10          GGCGGGA
TF Annotattion K-mers • 704 views
ADD COMMENT

Login before adding your answer.

Traffic: 1990 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6