Axiom Array and problems to read .cel files
1
0
Entering edit mode
10 months ago
ijvechetti ▴ 10

Hello all, after reading through the community, I could not find an answer to my problem. I have received an SNP array, from axiom and seems like that the files are the new Calvin CEL files. I cannot open them using affy, oligo packages. I read somewhere to try to use readCcg from affxparser package, and it does seem to work. However, I can not do all the CEL files at the same time. DO you guys happen to have any workaround that would allow me to read all the CEL files at once and proceed to SNP analysis?

Axiom Oligo Affy aroma.affymetrix • 335 views
ADD COMMENT
1
Entering edit mode
10 months ago

Hi, I am less familiar with the Axiom arrays. Can you not try Axiom Analysis Suite

Kevin

ADD COMMENT
1
Entering edit mode

Thanks Kevin. I think that is going to be my strategy. I appreciate it.

ADD REPLY

Login before adding your answer.

Traffic: 1856 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6