Axiom Array and problems to read .cel files
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10 months ago
ijvechetti ▴ 10

Hello all, after reading through the community, I could not find an answer to my problem. I have received an SNP array, from axiom and seems like that the files are the new Calvin CEL files. I cannot open them using affy, oligo packages. I read somewhere to try to use readCcg from affxparser package, and it does seem to work. However, I can not do all the CEL files at the same time. DO you guys happen to have any workaround that would allow me to read all the CEL files at once and proceed to SNP analysis?

Axiom Oligo Affy aroma.affymetrix • 335 views
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10 months ago

Hi, I am less familiar with the Axiom arrays. Can you not try Axiom Analysis Suite

Kevin

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Thanks Kevin. I think that is going to be my strategy. I appreciate it.