Question: Where to download specimen information for each TCGA aliquot ID
gravatar for freeustand
3 months ago by
freeustand0 wrote:

I have a list of ~10,000 TCGA aliquot IDs (e.g., 95d8884d-0961-4070-be07-55dce4c7bc8f). I need to know the specimen information (e.g., whether it is from a cancer specimen or a matched normal specimen, which cancer type it is etc) for each of these aliquot IDs. Where can I get this information? I searched the GDC Data Portal, but couldn't find anything useful such as a well-summarized sample annotation table file.

rna-seq tcga • 121 views
ADD COMMENTlink written 3 months ago by freeustand0

One option is to use TGCAutils (LINK).

Also see: Sample names for TCGA data from GDC-legacy archive

ADD REPLYlink modified 3 months ago • written 3 months ago by genomax91k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1791 users visited in the last hour