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3.8 years ago
freeustand
•
0
I have a list of ~10,000 TCGA aliquot IDs (e.g., 95d8884d-0961-4070-be07-55dce4c7bc8f). I need to know the specimen information (e.g., whether it is from a cancer specimen or a matched normal specimen, which cancer type it is etc) for each of these aliquot IDs. Where can I get this information? I searched the GDC Data Portal, but couldn't find anything useful such as a well-summarized sample annotation table file.
One option is to use TGCAutils (LINK).
Also see: Sample names for TCGA data from GDC-legacy archive